File format identified as PDB
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 91.7/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
1GAQ
reading 690 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
690 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 14 ms
File format identified as PDB
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 68.7/140.5
processors available: 8
useCommandThread: false
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@7a8047a9
The Resolver thinks Pdb
GLYCOSYLTRANSFERASE 07-JUN-95 1XYZ
A COMMON PROTEIN FOLD AND SIMILAR ACTIVE SITE IN TWO
DISTINCT FAMILIES OF BETA-GLYCANASES
found biomolecule 1: A
biomolecule 1: number of transforms: 1
found biomolecule 2: B
biomolecule 2: number of transforms: 1
Setting space group name to P 1
1XYZ
reading 5621 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
5621 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 48 ms
File format identified as PDB
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 68.9/140.5
processors available: 8
useCommandThread: false
Attempting to connect with MSAprobsWS...
The Resolver thinks Pdb
TYROSINE KINASE 04-MAY-99 1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 31 ms
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 68.3/140.5
processors available: 8
useCommandThread: false
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@6b83b427
The Resolver thinks Pdb
OXIDOREDUCTASE/ELECTRON TRANSPORT 08-MAY-00 1GAQ
1GAQ
reading 690 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
690 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 12 ms
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 62.0/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
Attempting to connect with GLprobsWS...
GLYCOSYLTRANSFERASE 07-JUN-95 1XYZ
A COMMON PROTEIN FOLD AND SIMILAR ACTIVE SITE IN TWO
DISTINCT FAMILIES OF BETA-GLYCANASES
found biomolecule 1: A
biomolecule 1: number of transforms: 1
found biomolecule 2: B
biomolecule 2: number of transforms: 1
Setting space group name to P 1
1XYZ
reading 5621 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
5621 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 45 ms
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 64.4/140.5
processors available: 8
useCommandThread: false
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@2a158d58
The Resolver thinks Pdb
TYROSINE KINASE 04-MAY-99 1QCF
CRYSTAL STRUCTURE OF HCK IN COMPLEX WITH A SRC FAMILY-
SELECTIVE TYROSINE KINASE INHIBITOR
found biomolecule 1: A
biomolecule 1: number of transforms: 1
PTR = O-PHOSPHOTYROSINE
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-
PP1 = 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE
Setting space group name to P 21 21 21
1QCF
reading 3959 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
3959 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 24 ms
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 60.3/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
reading 51 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
51 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 15.1.53 2021-02-10 09:12 DSSP analysis for model 1.1 - null
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer in Java for our purposes.
Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.
All bioshapes have been deleted and must be regenerated.
Time for creating model: 4 ms
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Attempting to connect with AAConWS...
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 58.4/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
TRANSPORT PROTEIN 08-APR-15 1EJG
1EJG
reading 4 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
4 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 1 ms
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
Operating headless display=null nographicsallowed=true
(C) 2015 Jmol Development
Jmol Version: 15.1.53 2021-02-10 09:12
java.vendor: Java: Oracle Corporation
java.version: Java 11.0.19
os.name: Linux
Access: ALL
memory: 58.4/140.5
processors available: 8
useCommandThread: false
The Resolver thinks Pdb
TRANSPORT PROTEIN 08-APR-15 4UJ4
4UJ4
reading 6 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
6 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 2 ms